Convert ASAP 3 assessments into an operating model

Reads a fitted ASAP model and uses the MLE estimates with identical reconstruction among simulations. Future recruitment is sampled from a lognormal distribution with autocorrelation. ASAP2Data imports a Data object.

Usage

ASAP2OM(
  asap,
  nsim = 48,
  proyears = 50,
  mcmc = FALSE,
  Name = "ASAP Model",
  Source = "No source provided",
  nyr_par_mu = 3,
  Author = "No author provided",
  report = FALSE,
  silent = FALSE
)

ASAP2Data(asap, Name = "ASAP assessment")

Arguments

asap: A list returned by ASAP, e.g., asap <- dget("asap3.rdat").
nsim: The number of simulations in the operating model
proyears: The number of MSE projection years
mcmc: Logical, whether to use mcmc samples. Currently unsupported.
Name: The name of the operating model
Source: Reference to assessment documentation e.g. a url
nyr_par_mu: integer, the number of recent years to estimate vulnerability over for future projections
Author: Who did the assessment
report: Logical, should a comparison of biomass reconstruction be produced?
silent: Logical, should progress reporting be printed to the console?

Value

An operating model OM class.

Details

Length at age is not used in ASAP so arbitrary placeholder values are used for length-based parameters. Update these parameters to model length in the operating model.

Author

Q. Huynh