A projection by projection plot of F/FMSY, B/BMSY, B/B0, and yield
Pplot2( MSEobj, YVar = c("F_FMSY", "SSB_SSBMSY"), MPs = NA, sims = NULL, traj = c("all", "quant", "both"), quants = c(0.1, 0.9), incquant = TRUE, quantcol = "lightgray", RefYield = c("lto", "curr"), LastYr = TRUE, ref.lines = c(0.5, 1, 1.5), maxMP = 6, alpha = 60, cex.axis = 1, cex.lab = 1, YLab = NULL, incMP = TRUE, MPcex = 1, MPcol = "black", incLeg = TRUE, cex.leg = 1.5, legPos = "topleft", yline = NULL, xline = NULL, parOR = FALSE, xaxis = TRUE, yaxis = TRUE, oneIt = TRUE, ... )
An object of class MSE
What to plot on the y-axis? Options are:
'SSB_SSBMSY', 'F_FMSY', 'Yield')
Optional subset by MP
Optional subset by simulation
Plot all projections (
all), only quantiles
quant), or both projections and median (
Numeric vector of length 2 specifying the quantiles (e.g., 10th and 90th. Median is always included)
Logical. Include the quantiles or only plot median?
Colour of the quantile polygon
Should yield be relative to long-term optimum (
or last historical year (
Logical. Include the last historical year in the yield projections?
Numeric vector of y-values for horizontal reference lines. Set to NULL to remove lines.
Maximum number of MPs to plot
Alpha for transparency of lines
Size of axis text
Size of axis label
Optional label for y-axis
Logical. Include name of MP?
Size of MP label
Optional character vector of colors for MP labels
Logical. Include a legend?
Size of legend text
Optional horizontal lines
Optional vertical lines
Logical to over-ride the par parameters
Logical. Should x-axis labels be displayed?
Logical. Should y-axis labels be displayed?
Logical. Should one iteration be plotted on the quantile plot?
Additional arguments to be passed to plotting functions