Generic Trade-Plot Function

Usage

TradePlot(
  MSEobj,
  ...,
  Lims = c(0.2, 0.2, 0.8, 0.8),
  Title = NULL,
  Labels = NULL,
  Satisficed = FALSE,
  Show = "both",
  point.size = 2,
  lab.size = 4,
  axis.title.size = 12,
  axis.text.size = 10,
  legend = TRUE,
  legend.title.size = 12,
  position = c("right", "bottom"),
  cols = NULL,
  fill = "gray80",
  alpha = 0.4,
  PMlist = NULL,
  Refs = NULL,
  Yrs = NULL
)

Tplot(MSEobj, Lims = c(0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5), ...)

Tplot2(MSEobj, Lims = c(0.2, 0.2, 0.8, 0.8), ...)

Tplot3(MSEobj, Lims = c(0.5, 0.5, 0.8, 0.5), ...)

NOAA_plot2(MSEobj)

Arguments

MSEobj: An object of class MSE
...: Names of Performance Metrics (PMs), or other arguments to TradePlot. First PM is recycled if number of PMs is not even
Lims: A numeric vector of acceptable risk/minimum probability thresholds. Recycled if not equal to number of PMs.
Title: Optional title for each plot. Character vector of length(PMs)/2. Recycled.
Labels: Optional named list specifying new labels for MPs. For example: Labels = list(AvC="Average Catch", CC1="Constant Catch")
Satisficed: Logical. Show only the MPs that meet minimum acceptable thresholds (specified in Lims)
Show: Character. Show the plots ('plots'), results table ('table'), 'both' (default), or invisibly return objects only ('none')
point.size: Numeric. Size of the MP points
lab.size: Numeric. Size of MP label. Set to NULL to remove MP labels.
axis.title.size: Numeric. Size of axis titles
axis.text.size: Numeric. Size of axis text
legend: Logical. Include legend?
legend.title.size: Numeric. Size of legend title text
position: Character. Position of legend - 'right' or 'bottom'
cols: Optional character vector of colors for the legend (MP Types) or if cols is a character vector of length MSEobj@nMPs, then the MP labels are colored (no color legend).
fill: Character. Color of the fill
alpha: Numeric. Transparency of fill
PMlist: Optional list of PM names. Overrides any supplied in ... above
Refs: An optional named list (matching the PM names) with numeric values to override the default Ref values. See examples.
Yrs: An optional named list (matching the PM names) with numeric values to override the default Yrs values. See examples.

Value

Invisibly returns a list with summary table of MP performance and the ggplot objects for the plots

Functions

Tplot(): A trade-off plot showing probabilities that:
- not overfishing (PNOF) against long-term yield is > 50\
- spawning biomass is below BMSY (P100) against LTY
- spawning biomass is below 0.5BMSY (P50) against LTY
- spawning biomass is below 0.1BMSY (P10) against LTY
Tplot2(): A trade-off plot showing probabilities that:
- short-term yield is > 50\
- spawning biomass is below 0.1BMSY (P10) against average annual variability in yield is < 20\
Tplot3(): A trade-off plot showing probabilities that:
- not overfishing (PNOF) against long-term yield is > 50\
- spawning biomass is below 0.1BMSY (P10) against average annual variability in yield is < 20\
NOAA_plot2(): A trade-off plot developed for NOAA showing probabilities that:
- not overfishing (PNOF) against long-term yield is > 50\
- spawning biomass is below 0.5BMSY (P50) against average annual variability in yield is < 15\

Author

A. Hordyk