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Reads iSCAM files into a hierarchical R list object

Source: R/iSCAM2OM.R
iSCAM.Rd

Internal functions for reading iSCAM input and output files into R

Usage

load.iscam.files(model.dir, burnin = 1000, thin = 1, verbose = FALSE)

fetch.file.names(path, filename)

read.report.file(fn)

read.data.file(file = NULL, verbose = FALSE)

read.control.file(
  file = NULL,
  num.gears = NULL,
  num.age.gears = NULL,
  verbose = FALSE
)

read.projection.file(file = NULL, verbose = FALSE)

read.par.file(file = NULL, verbose = FALSE)

read.mcmc(model.dir = NULL, verbose = TRUE)

Arguments

model.dir

Folder name

burnin

The initial mcmc samples to be discarded

thin

The degree of chain thinning 1 in every thin iterations is kept

verbose

should detailed results be printed to console

path

File path

filename

The filename

fn

File location

file

File location

num.gears

The number of gears

num.age.gears

The number age-gears

Functions

  • load.iscam.files(): Wrapper function to generate R list

  • fetch.file.names(): A function for returning the three types of iSCAM input and output files

  • read.report.file(): A function for returning the results of the .rep iscam file

  • read.data.file(): A function for returning the results of the .dat iscam file

  • read.control.file(): A function for returning the results of the iscam control file

  • read.projection.file(): A function for returning the results of the iscam projection file

  • read.par.file(): A function for returning the results of the iscam .par file

  • read.mcmc(): A function for returning the results of the iscam mcmc files

See also

iSCAM2OM

Author

Chris Grandin (DFO PBS)